%LaTeX thesis layout as used and put together by Prof. Dorien Herremans, dorien_herremans@sutd.edu.sg
% To update the index, run the command 'makeindex thesis' in a terminal
\documentclass[parskip=half,10pt,twoside]{scrbook}
\PassOptionsToPackage{newparttoc}{titlesec} % MUST be called before classicthesis
\usepackage{lipsum, lineno}
\usepackage{mypreamble}
\usepackage{makeidx}
\makeindex
\usepackage[%
% drafting,
% minionpro,
% minionprospacing,
% linedheaders,
% eulerchapternumbers,
% eulermath,
% beramono,
dottedtoc,
floatperchapter,
parts
]{classicthesis}
\renewcommand{\cftpartpresnum}{Part~}
\newlength{\mylen} % a "scratch" length
\settowidth{\mylen}{\cftpartpresnum} % extra space
\addtolength{\cftpartnumwidth}{\mylen} % add the extra space
\DeclareUnicodeCharacter{0233}{\egu}
\usepackage{chronosys}
% \usepackage{nameref}
% \usepackage{geometry}
% \geometry{paperwidth=18.91cm,paperheight=24.589cm,
% bindingoffset=0.89cm, % gutter
% inner=2cm, % inside margin
% outer=4cm, % outside margin
% vmargin=2.5cm, % top and bottom margins
% marginparsep=0.6cm,
% marginparwidth=3cm,
% }
%remove the mag option when printing for real paperwidth should be 17 xxx
% \usepackage[bindingoffset=.5cm,margin=2cm,includeheadfoot,paperwidth=17cm,paperheight=24cm,mag=1270]{geometry}
\usepackage[bindingoffset=.5cm,margin=2cm,includeheadfoot,paperwidth=16.5cm,paperheight=24cm,mag=1270]{geometry}
% \usepackage[bindingoffset=.5cm,margin=2cm,includeheadfoot,paperwidth=16.5cm,paperheight=24cm]{geometry}
\newcommand{\tableheadline}[1]{\multicolumn{1}{c}{\spacedlowsmallcaps{#1}}}
% fixes for marginpar and latex
\usepackage{mparhack}
\usepackage{fixltx2e}
\renewcommand\thepart{\arabic{part}}
\usepackage{bibentry}
%
% \renewcommand{\cftpartpresnum}{Part~}
%
% \newlength{\mylen} % a "scratch" length
% \settowidth{\mylen}{\cftpartpresnum} % extra space
% \addtolength{\cftpartnumwidth}{\mylen} % add the extra space
% \usepackage[libertine]
\newenvironment{abstract}{\rightskip0.4in\itshape}{}
\begin{document}
\frontmatter
%input the titlepage
\input{frontandbackmatter/title}
\clearpage
\input{frontandbackmatter/acknowledgements}
% \thispagestyle{empty} %check this, new pagestyle
% \makeatletter \renewcommand{\@dotsep}{10000} \makeatother
\begin{singlespace}
\clearpage \manualmark
\markboth{\spacedlowsmallcaps{Overview}}{\spacedlowsmallcaps{Overview}}
\shorttoc{Overview}{0}
\end{singlespace}
\clearpage \manualmark
\markboth{\spacedlowsmallcaps{Contents}}{\spacedlowsmallcaps{Contents}}
\tableofcontents
% \markboth{\spacedlowsmallcaps{Contents3}}{\spacedlowsmallcaps{Contents3}}
\clearpage \addcontentsline{toc}{chapter}{\tocEntry{List of Figures}} \manualmark \markboth{\spacedlowsmallcaps{List of Figures}}{\spacedlowsmallcaps{List of Figures}} \listoffigures
\clearpage \addcontentsline{toc}{chapter}{\tocEntry{List of Tables}} \manualmark \markboth{\spacedlowsmallcaps{List of Tables}}{\spacedlowsmallcaps{List of Tables}} \listoftables
\clearpage
% \clearpage{\pagestyle{plain}\cleardoublepage}
\mainmatter
% \chapter{Some very extremely long chapter title that might not be best but I still want it on here and a little bit longer}
% \let\LaTeXStandardPart\part
% \renewcommand{\part}[1]{%
% \LaTeXStandardPart[]{#1}%
% \addcontentsline{toc}{part}{Part~\thepart~#1}%
% }%
% \listoffixmes
\input{frontandbackmatter/introduction}
%Make the headings normal again:
\renewcommand{\chaptermark}[1]{\markboth{\spacedlowsmallcaps{\chaptername}\ \spacedlowsmallcaps{\thechapter}.\ #1}{}}
\renewcommand{\sectionmark}[1]{ \markright{\spacedlowsmallcaps{\thesection}.\ \spacedlowsmallcaps{#1}}{} }
\part{Your first part}
\label{par:rules}
\input{chapter1/topic}
% \input{cp5/papercp5}
% \input{fux/paperfux}
\part{The other part: experiments}
\label{par:ml}
%replace with other chapters:
%\input{chapter1/topic}
\input{frontandbackmatter/conclusions}
\input{frontandbackmatter/dutchsummary}
\appendix
\input{appendices/appendix}
\input{appendices/appendix2}
\input{frontandbackmatter/publications}
\clearpage
\backmatter
\manualmark
\markboth{\spacedlowsmallcaps{\bibname}}{\spacedlowsmallcaps{\bibname}} % work-around to have small caps also
%add the non numbered sections to the TOC:
\addtocontents{toc}{\protect\vspace{\beforebibskip}}
\addcontentsline{toc}{chapter}{\tocEntry{Bibliography}}
\bibliography{bib/references}
% \bibliographystyle{plainnat}
\bibliographystyle{abbrvnat}
\clearpage \addcontentsline{toc}{chapter}{\tocEntry{Index}} \manualmark \markboth{\spacedlowsmallcaps{Index}}{\spacedlowsmallcaps{Index}}
\printindex
\end{document}
