%% LLT: Turn off some annoying warnings...
\RequirePackage{silence}
\WarningFilter{titlesec}{Non standard sectioning command}
\WarningFilter{scrreprt}{Usage of package}
\WarningFilter{scrreprt}{Activating an ugly workaround}
% *********************************************************
% CHOOSE THEME (ucph, sund, science, hum, samf, jura, teo)
% *********************************************************
\newcommand{\thesisTheme}{ucph} % to colortheme and titlepage image
% *********************************************************
% DOCUMENT CLASS
% *********************************************************
\documentclass[%
	paper=A4,					% paper size
	12pt,						% font size
	twoside=true,				% two-sided printing
	openright,					% doublepage cleaning ends up right side
	parskip=full,				% spacing value / method for paragraphs
	chapterprefix=true,			% prefix for chapter marks
	headings=normal,			% size of headings
	bibliography=totoc,			% include bib in toc
	listof=totoc,				% include listof entries in toc
	titlepage=on,				% own page for each title page
	captions=tableabove,		% display table captions above the float env
	draft=false,				% value for draft version
	abstract=on,                % abstract title on/off
]{scrreprt}
\usepackage[utf8]{inputenc}
\usepackage[english]{babel}     % adjust the language
% **************************************************
% COMMANDS FOR REUSE
% **************************************************
% Thesis
\newcommand{\thesisTitle}{Making a UCPH thesis template}
\newcommand{\thesisSubtitle}{A case study for all faculties at University of Copenhagen}
\newcommand{\thesisName}{Mikkel Roald-Arbøl}
\newcommand{\thesisSubject}{MSc in Human Biology}
\newcommand{\thesisDate}{September 2019}
\newcommand{\thesisVersion}{Second Version}
% Supervisors & Collaborators
\newcommand{\thesisExternalSupervisor}{John Doe}
\newcommand{\thesisInternalSupervisor}{Jane Doe}
\newcommand{\thesisCollab}{If any?}
% University of Copenhagen
\newcommand{\thesisUniversity}{\protect{University of Copenhagen}}
\newcommand{\thesisFaculty}{Faculty of Health and Medical Sciences}
\newcommand{\thesisInstitute}{Masters Degree in Human Biology}
\newcommand{\thesisCity}{Copenhagen N}
\newcommand{\thesisAddress}{Blegdamsvej 3B}
\newcommand{\thesisPostal}{2200}
% External institution: University of Sussex
\newcommand{\thesisUniSus}{\protect{University of Sussex}}
\newcommand{\thesisUniSusDep}{Department of Life Sciences}
% *********************************************************
% PACKAGES
% *********************************************************
\usepackage[					% UCPH thesis style
    figuresep=colon,        
    sansserif=false,        
    hangfigurecaption=false,
    hangsection=true,       
    hangsubsection=true,    
    colorize=full,          
    colortheme={\thesisTheme},  % ucph, sund, science, hum, etc.?
    bibsys=biber,
    bibfile=references,       % defines your .bib file
    bibstyle=authoryear,        % refer to https://bit.ly/2YsvIJz
]{ucphthesis}
\hypersetup{					% setup the hyperref-package options
	pdftitle={\thesisTitle},	% 	- title (PDF meta)
	pdfsubject={\thesisSubject},% 	- subject (PDF meta)
	pdfauthor={\thesisName},	% 	- author (PDF meta)
	plainpages=false,			% 	-
	colorlinks=false,			% 	- colorize links
	pdfborder={0 0 0},			% 	-
	breaklinks=true,			% 	- allow line break inside links
	bookmarksnumbered=true,		%
	bookmarksopen=true			%
    }
% *********************************************************
% Cover page content
% *********************************************************
\subject{\vspace{4.5cm} \thesisSubject}
\title{\thesisTitle}
\subtitle{\thesisSubtitle}
\author{\thesisName \\
        \small{Supervised by {\thesisExternalSupervisor} and {\thesisInternalSupervisor}}
    }
\date{\thesisDate}
% ********************************************************* 
% THESIS CONTENT
% *********************************************************
\begin{document}
% -------------------------- 
% Front matter
% --------------------------
\pagenumbering{roman}
\pagestyle{empty}				            % no header or footers
\AddToShipoutPicture*{\TitleBackground}     % adding background picture
\maketitle                                  % making the title
\input{frontbackmatter/titlepage.tex}
    \clearpage
\pagestyle{plain}
\input{frontbackmatter/quotes.tex}        % INCLUDE Quotes
\input{frontbackmatter/preface.tex}       % INCLUDE Preface
\input{frontbackmatter/acknowledgements.tex} % INCLUDE Acknowledgements
\input{frontbackmatter/abstract.tex}      % INCLUDE Abstract
    \clearpage
\setcounter{tocdepth}{2}		% define depth of toc
\tableofcontents				% display table of contents
    \clearpage
% -------------------------- 
% Main matter
% --------------------------
\pagenumbering{arabic}			% arabic page numbering
\setcounter{page}{1}			% set page counter
\pagestyle{maincontentstyle} 	% fancy header and footer
\input{mainmatter/rationale.tex}    % INCLUDE Rationale
\input{mainmatter/aims.tex}         % INCLUDE Hypothesis
\input{mainmatter/introduction.tex} % INCLUDE Introduction
\input{mainmatter/methods.tex}      % INCLUDE Methods
\input{mainmatter/results.tex}      % INCLUDE Results
\input{mainmatter/discussion.tex}   % INCLUDE Discussion
\input{mainmatter/conclusion.tex}   % INCLUDE Conclusion
\input{mainmatter/perspectives.tex} % INCLUDE Perspectives
% -------------------------- 
% Back matter
% --------------------------
\input{frontbackmatter/bibliography.tex}
% ********************************************************* 
% END OF THESIS
% *********************************************************
\end{document}